Fig. 3From: The impact of applying various de novo assembly and correction tools on the identification of genome characterization, drug resistance, and virulence factors of clinical isolates using ONT sequencingHeatmap presenting antimicrobial resistance identification by staramr (ResFinder) of nine clinical E. coli isolates using Flye, Canu, Wtdbg2 and NECAT as read assemblers with Medaka, NextPolish and Racon read correction tools. AMP = ampicillin, AMC/C’ = amoxicillin/clavulanic acid, Cfx = cefoxitin, CRO = ceftriaxone, CIP = ciprofloxacin, ERY = erythromycin, AZM = azithromycin, KAN = kanamycin, L = lincomycin, STR = streptomycin, TET = tetracyclin, TMP = trimethoprim. Staramr classified the presence of the resistance genes to 100% identity, > 99% identity, and no hits based to the corresponding colorsBack to article page