Table 1 Pythium irregulare CBS 494.86 genome statistics
Assembly statistics for genome | |
|---|---|
Estimated genome size | 47.1 Mb |
Number of scaffolds | 9658 |
Number of scaffolds (≥ 1000 bp) | 6653 |
Number of scaffolds (≥ 5000 bp) | 2204 |
Number of scaffolds (> = 10,000 bp) | 1192 |
Number of scaffolds (≥ 25,000 bp) | 334 |
Number of scaffolds (≥ 50,000 bp) | 64 |
Total length | 45,784,433 |
Total length (≥1000 bp) | 43,603,753 |
Total length (≥ 5000 bp) | 33,709,764 |
Total length (≥ 10,000 bp) | 26,550,523 |
Total length (≥ 25,000 bp) | 13,047,962 |
Total length (≥ 50,000 bp) | 4,077,371 |
Largest scaffolds | 191,247 |
GC (%) | 53.43 |
Scaffolds N50 | 13,460 |
Scaffolds N75 | 4686 |
Scaffolds L50 | 878 |
Scaffolds L75 | 2334 |
# N’s per 100 kbp | 262.38 |
Number of genes | 17,758 |
Number of mRNAs | 17,727 |
Number of tRNAs | 29 |
Number of rRNAs | 2 |
Total CDS length | 23,740,968 |
Total Gene length | 23,750,652 |
Average gene length | 1337.54 |
Longest gene | 26,310 |
Shortest gene | 42 |
% of genome covered by genes | 51.87 |
% of genome covered by CDS | 51.85 |
Average number of exons | 2.58 |
Max number of exons | 42 |