Table 1 Array performance.
From: Microarray-based method for detection of unknown genetic modifications
A. thaliana | Oryza sativa | |||
|---|---|---|---|---|
ida/WT | SALK/WT | WT/WT | CecA/WT | |
Mean signal ratio | 0.96 | 0.95 | 0.98 | 1.09 |
Signal ratio range | 0.049–9.64 | 0.13–18.45 | 0.085–3.29 | 0.24–23.58 |
Standard deviation (signal ratio) | 0.35 | 0.67 | 0.16 | 0.72 |
Total number of positive probes (percent of total number of probes) | 854 (2.29%) | 1026 (2.75%) | 1120 (3.00%) | 845 (2.27%) |
Number of probes for target sequence | 1252 | 2056 | - | 910 |
True positive probes (target sequence) | 605 | 745 | - | 322 |
False positives (percent of total number of probes) | 249 (0.69%) | 281 (0.80%) | 1120 (3.00%) | 523 (1.40%) |
Number of windows detected | 145 | 394 | 0 | 152 |
Number of windows after filtering | 11 | 15 | - | 8 |
Number of probes per window | 33–63 | 32–59 | - | 32–49 |
Length of windows | 176–325 | 167–312 | - | 147–255 |