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Table 3 ERCC outliers grouped by performance criteria

From: Evaluation of the External RNA Controls Consortium (ERCC) reference material using a modified Latin square design

 

Log2 Target

 

Response Curve Outliers

Non-monotonic

Controls

Relative Abundance

Subpool

AGLa

ILM

NIAID

LifeTech

ILM HiSeq

AGLa

ILM

NIAID

LifeTech

ILM HiSeq

ERCC-00156b

1

B

   

â—¯

    

â—¯

 

ERCC-00147

2

C

  

â—¯

     

â—¯

â—¯

ERCC-00148b

2

D

â—¯[1,2]

   

â—¯

â—¯[1]

  

â—¯

â—¯

ERCC-00137

3

B

â—¯[2]

    

â—¯[1]

   

â—¯

ERCC-00143b

3

E

â—¯[1]

    

â—¯[1]

    

ERCC-00131b

4

D

â—¯[1]

 

â—¯

  

â—¯[1,2]

    

ERCC-00134b

4

E

â—¯[1]

    

â—¯[1,2]

    

ERCC-00168b

6

E

â—¯[1,2]

   

â—¯

â—¯[2]

 

â—¯

 

â—¯

ERCC-00095

8

E

       

â—¯

  

ERCC-00157

1

C

         

â—¯

ERCC-00158

1

D

     

â—¯[1]

    

ERCC-00160

1

E

     

â—¯[1]

    

ERCC-00145

2

B

     

â—¯[1]

    

ERCC-00150

2

E

     

â—¯[1]

    

ERCC-00138b

3

C

     

â—¯[1,2]

  

â—¯

â—¯

ERCC-00142

3

D

     

â—¯[2]

   

â—¯

ERCC-00128

4

B

     

â—¯[2]

  

â—¯

 

ERCC-00111

6

C

         

â—¯

ERCC-00097

7

B

        

â—¯

 

ERCC-00098

7

C

       

â—¯

â—¯

 

ERCC-00104

7

E

         

â—¯

ERCC-00086

8

C

      

â—¯

  

â—¯

ERCC-00062b

12

C

         

â—¯

ERCC-00046b

13

C

         

â—¯

ERCC-00162

0

A

â—¯[1]

         

ERCC-00126

4

A

   

â—¯

      

ERCC-00113b

5

C

â—¯[2]

 

â—¯

â—¯

      

ERCC-00117

5

C

  

â—¯

       

ERCC-00120

5

D

    

â—¯

     

ERCC-00109

6

B

  

â—¯

â—¯

â—¯

     

ERCC-00077

8

A

    

â—¯

     

ERCC-00081

9

D

    

â—¯

     

ERCC-00060

10

A

   

â—¯

      

ERCC-00075

10

D

   

â—¯

      

ERCC-00171

10

B

    

â—¯

     

ERCC-00054

11

B

    

â—¯

     

ERCC-00058b

11

D

â—¯[1,2]

â—¯

â—¯

â—¯

      

ERCC-00069

11

E

  

â—¯

 

â—¯

     

ERCC-00044

12

B

   

â—¯

â—¯

     

ERCC-00025

14

A

    

â—¯

     

ERCC-00028

14

B

    

â—¯

     

ERCC-00040

14

C

 

â—¯

        

ERCC-00042

14

E

 

â—¯

 

â—¯

      

ERCC-00007

16

D

   

â—¯

      

ERCC-00022

16

C

â—¯[1,2]

         

ERCC-00170b

16

A

â—¯[2]

â—¯

 

â—¯

â—¯

     

ERCC-00023

18

D

â—¯[1,2]

         

ERCC-00002

20

B

    

â—¯

     

ERCC-00012

20

A

    

â—¯

     

ERCC-00024

20

E

â—¯[1,2]

         
  1. The following analytes were incorrectly prepared as their antisense sequence and omitted from the data anlysis: ERCC-00009, ERCC-00014, ERCC-00057, ERCC-00059, ERCC-00099, ERCC-00108, and ERCC-00116
  2. aNumbers in bracket indicate array type: 1 = Agilent 1-color, 2 = Agilent 2-color
  3. bDiscussed further in main text