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Table 1 A comparison of the top thirty ranked QTT-A sequences across all amplification experiments

From: DNA polymerase preference determines PCR priming efficiency

8 bp window sequence

Top 30 ranked QTT-A sequences: comparison of rank in other amplification experiments

QTT-A

QTT-AR

PGT-A

PGT-AR

QTT-A63

QTT-A65

QTT-A67

QHH-B

GGGGGC GG

1

3

2

3

1

1

1

4180

TTGGGC GG

2

1

3

9

8

5

2

20382

GGGCCG GG

3

12

5

2

5

3

3

606

TGGCCG GG

4

5

4

4

6

6

6

3065

GGTCCG GG

5

6

1

1

3

2

4

1666

GGGTGC GG

6

9

6

13

16

12

9

2377

GTGGGC GG

7

11

10

5

9

7

11

1464

TTGCCG GG

8

8

8

7

22

21

20

13440

GTGCCG GG

9

13

7

8

7

13

17

220

GGGGGC CG

10

19

21

26

2

4

5

3950

TGGTGC GG

11

18

9

14

37

28

19

8530

TTGGGC CG

12

10

19

24

21

27

14

26404

TGCCCG GG

13

14

13

6

13

15

21

3370

GGTCCG GC

14

17

11

12

18

18

23

3802

GGGGGC CA

15

31

24

29

12

14

15

8559

GGGCCG GC

16

32

30

15

10

9

28

2255

TGGCCG GC

17

15

15

16

26

23

22

5312

TTGTGC GG

18

27

23

40

51

69

44

17564

TGTCCG GG

19

21

12

11

32

33

33

9598

TTGGGC CA

20

16

34

35

58

51

47

29598

GGTGGC GG

21

22

16

17

19

22

24

1890

GGGGGC CC

22

36

47

45

15

17

13

10961

TTTGGC GG

23

33

32

22

57

71

39

24345

GGCCCG GG

24

26

14

10

17

16

18

508

TGGGCG GG

25

29

29

23

29

47

40

5616

GGGCGC GG

26

87

33

38

25

34

42

1337

TTGCCG GC

27

23

31

32

46

52

65

18324

TTGGGC GC

28

24

51

57

92

62

60

25137

GGGGGC GC

29

47

58

64

27

24

27

9051

GGGGGC TG

30

35

55

80

4

8

10

8558

  1. The top thirty sequences of the QTT-A touchdown PCR experiments were ranked and compared to the QTT-A repeat experiment (QTT-AR), the PGT-A and PGT-A repeat experiments (PGT-AR), the QTT-A experiments performed at 63°C, 65°C, and 67°C (QTT-A63, QTT-A65, and QTT-A67), and the QHH-B touchdown PCR amplification experiment.